IL_6UZ7_029

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6UZ7|1|2|A|578, 6UZ7|1|2|U|580, 6UZ7|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_029 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1814

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|G|561
6UZ7|1|2|U|562
6UZ7|1|2|G|563
6UZ7|1|2|C|564
6UZ7|1|2|C|565
6UZ7|1|2|A|566
6UZ7|1|2|G|567
*
6UZ7|1|2|C|574
6UZ7|1|2|G|575
6UZ7|1|2|G|576
6UZ7|1|2|U|577
6UZ7|1|2|A|578
6UZ7|1|2|A|579
6UZ7|1|2|U|580
6UZ7|1|2|U|581
6UZ7|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain X

RPS23

Chain e

40S ribosomal protein S30