IL_6UZ7_057

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_057 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2611

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6UZ7|1|2|U|1288
6UZ7|1|2|U|1289
6UZ7|1|2|G|1290
6UZ7|1|2|G|1291
*
6UZ7|1|2|C|1322
6UZ7|1|2|G|1323
6UZ7|1|2|A|1324
6UZ7|1|2|A|1325

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0

Chain C

KLLA0F09812p

Chain D

KLLA0D08305p

Chain R

KLLA0B01474p