IL_6UZ7_139

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_139 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0916

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6UZ7|1|5|G|1415
6UZ7|1|5|U|1416
6UZ7|1|5|A|1417
6UZ7|1|5|G|1418
6UZ7|1|5|U|1419
6UZ7|1|5|A|1420
6UZ7|1|5|G|1421
*
6UZ7|1|5|C|2323
6UZ7|1|5|G|2324
6UZ7|1|5|A|2325
6UZ7|1|5|A|2326
6UZ7|1|5|A|2327
6UZ7|1|5|C|2328

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

KLLA0B07139p

Chain AP

KLLA0A06336p