IL_6UZ7_197

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6UZ7|1|5|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_197 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1116

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6UZ7|1|5|U|3015
6UZ7|1|5|A|3016
6UZ7|1|5|A|3017
6UZ7|1|5|U|3018
6UZ7|1|5|U|3019
*
6UZ7|1|5|A|3059
6UZ7|1|5|C|3060
6UZ7|1|5|C|3061
6UZ7|1|5|A|3062

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

KLLA0E06997p

Chain AW

60S ribosomal protein L24