IL_6UZ7_256

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_256 not in the Motif Atlas

Homologous match to IL_8P9A_421

Geometric discrepancy: 0.2306

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6UZ7|1|2|G|884
6UZ7|1|2|U|885
6UZ7|1|2|A|886
6UZ7|1|2|U|887
*
6UZ7|1|2|A|923
6UZ7|1|2|G|924
6UZ7|1|2|A|925
6UZ7|1|2|C|926

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

KLLA0D16027p

Chain B

40S ribosomal protein S1

Chain Bp

KLLA0E05941p

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26