IL_6V39_023

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6V39|1|AN1|G|774, 6V39|1|AN1|A|786, 6V39|1|AN1|A|787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_023 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.1079

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6V39|1|AN1|G|773
6V39|1|AN1|G|774
6V39|1|AN1|G|775
*
6V39|1|AN1|U|785
6V39|1|AN1|A|786
6V39|1|AN1|A|787
6V39|1|AN1|U|788
6V39|1|AN1|C|789

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain R

50S ribosomal protein L22