IL_6V39_041

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_041 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2303

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6V39|1|AN1|G|1035
6V39|1|AN1|A|1036
6V39|1|AN1|A|1037
6V39|1|AN1|G|1038
*
6V39|1|AN1|C|1111
6V39|1|AN1|G|1112
6V39|1|AN1|G|1113
6V39|1|AN1|C|1114

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25