IL_6V39_074

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6V39|1|AN1|A|1934, 6V39|1|AN1|U|1940, 6V39|1|AN1|U|1959

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_074 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1712

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6V39|1|AN1|C|1930
6V39|1|AN1|G|1931
6V39|1|AN1|A|1932
6V39|1|AN1|A|1933
6V39|1|AN1|A|1934
6V39|1|AN1|5MU|1935
6V39|1|AN1|U|1936
6V39|1|AN1|C|1937
6V39|1|AN1|C|1938
6V39|1|AN1|U|1939
6V39|1|AN1|U|1940
6V39|1|AN1|G|1941
*
6V39|1|AN1|C|1957
6V39|1|AN1|C|1958
6V39|1|AN1|U|1959
6V39|1|AN1|G|1960

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain sN1

Small subunit ribosomal RNA; SSU rRNA