IL_6V39_125

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6V39|1|sN1|U|240, 6V39|1|sN1|C|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_125 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.2025

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6V39|1|sN1|G|238
6V39|1|sN1|A|239
6V39|1|sN1|U|240
6V39|1|sN1|U|241
6V39|1|sN1|A|242
6V39|1|sN1|G|243
*
6V39|1|sN1|C|273
6V39|1|sN1|G|274
6V39|1|sN1|A|275
6V39|1|sN1|C|276
6V39|1|sN1|G|277
6V39|1|sN1|A|278
6V39|1|sN1|U|279
6V39|1|sN1|C|280

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17