IL_6V3A_139

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6V3A|1|sN1|A|529, 6V3A|1|sN1|U|531

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_139 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.233

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6V3A|1|sN1|G|512
6V3A|1|sN1|PSU|513
6V3A|1|sN1|G|514
6V3A|1|sN1|C|515
6V3A|1|sN1|C|516
6V3A|1|sN1|A|517
6V3A|1|sN1|G|518
*
6V3A|1|sN1|C|525
6V3A|1|sN1|G|526
6V3A|1|sN1|G|527
6V3A|1|sN1|U|528
6V3A|1|sN1|A|529
6V3A|1|sN1|A|530
6V3A|1|sN1|U|531
6V3A|1|sN1|A|532
6V3A|1|sN1|C|533

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain l

30S ribosomal protein S12