IL_6V3A_207

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6V3A|1|sN1|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_207 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2538

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6V3A|1|sN1|U|681
6V3A|1|sN1|G|682
6V3A|1|sN1|U|683
6V3A|1|sN1|A|684
6V3A|1|sN1|G|685
*
6V3A|1|sN1|C|696
6V3A|1|sN1|G|697
6V3A|1|sN1|U|698
6V3A|1|sN1|A|699
6V3A|1|sN1|G|700
6V3A|1|sN1|A|701
6V3A|1|sN1|G|702
6V3A|1|sN1|A|703

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain AN1

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11