IL_6V3B_127
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 6V3B|1|sN1|U|240, 6V3B|1|sN1|C|276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V3B_127 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1497
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6V3B|1|sN1|G|238
6V3B|1|sN1|A|239
6V3B|1|sN1|U|240
6V3B|1|sN1|U|241
6V3B|1|sN1|A|242
6V3B|1|sN1|G|243
*
6V3B|1|sN1|C|273
6V3B|1|sN1|G|274
6V3B|1|sN1|A|275
6V3B|1|sN1|C|276
6V3B|1|sN1|G|277
6V3B|1|sN1|A|278
6V3B|1|sN1|U|279
6V3B|1|sN1|C|280
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
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