IL_6V3D_035

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCCCAAAA*UG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_035 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1158

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6V3D|1|AN1|C|1001
6V3D|1|AN1|C|1002
6V3D|1|AN1|C|1003
6V3D|1|AN1|C|1004
6V3D|1|AN1|A|1005
6V3D|1|AN1|A|1006
6V3D|1|AN1|A|1007
6V3D|1|AN1|A|1008
*
6V3D|1|AN1|U|1148
6V3D|1|AN1|G|1149

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20