IL_6V3D_046

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6V3D|1|AN1|U|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1189

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6V3D|1|AN1|C|1203
6V3D|1|AN1|G|1204
6V3D|1|AN1|A|1205
6V3D|1|AN1|U|1206
6V3D|1|AN1|G|1207
6V3D|1|AN1|A|1208
6V3D|1|AN1|A|1209
6V3D|1|AN1|G|1210
*
6V3D|1|AN1|U|1229
6V3D|1|AN1|G|1230
6V3D|1|AN1|G|1231
6V3D|1|AN1|A|1232
6V3D|1|AN1|G|1233

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20