IL_6V3D_055

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAA*UGAUG

Length

9 nucleotides

Bulged bases

6V3D|1|AN1|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_055 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6V3D|1|AN1|C|1432
6V3D|1|AN1|U|1433
6V3D|1|AN1|A|1434
6V3D|1|AN1|A|1435
*
6V3D|1|AN1|U|1549
6V3D|1|AN1|G|1550
6V3D|1|AN1|A|1551
6V3D|1|AN1|U|1552
6V3D|1|AN1|G|1553

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains