IL_6V3D_092

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3D_092 not in the Motif Atlas

Geometric match to IL_4KQY_003

Geometric discrepancy: 0.3096

The information below is about IL_4KQY_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6V3D|1|AN1|C|2452
6V3D|1|AN1|PSU|2453
6V3D|1|AN1|G|2454
6V3D|1|AN1|A|2455
*
6V3D|1|AN1|U|2489
6V3D|1|AN1|G|2490
6V3D|1|AN1|G|2491

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16