IL_6V3E_072

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGGG*CCUU

Length

9 nucleotides

Bulged bases

6V3E|1|sN1|G|923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3E_072 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2299

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6V3E|1|sN1|G|922
6V3E|1|sN1|G|923
6V3E|1|sN1|G|924
6V3E|1|sN1|G|925
6V3E|1|sN1|G|926
*
6V3E|1|sN1|C|1385
6V3E|1|sN1|C|1386
6V3E|1|sN1|U|1387
6V3E|1|sN1|U|1388

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5