IL_6V3E_076

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAGAAG*CCACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3E_076 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.341

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6V3E|1|sN1|C|1427
6V3E|1|sN1|A|1428
6V3E|1|sN1|G|1429
6V3E|1|sN1|A|1430
6V3E|1|sN1|A|1431
6V3E|1|sN1|G|1432
*
6V3E|1|sN1|C|1463
6V3E|1|sN1|C|1464
6V3E|1|sN1|A|1465
6V3E|1|sN1|C|1466
6V3E|1|sN1|G|1467

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20