IL_6V3E_079

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6V3E|1|sN1|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3E_079 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2921

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6V3E|1|sN1|U|681
6V3E|1|sN1|G|682
6V3E|1|sN1|U|683
6V3E|1|sN1|A|684
6V3E|1|sN1|G|685
*
6V3E|1|sN1|C|696
6V3E|1|sN1|G|697
6V3E|1|sN1|U|698
6V3E|1|sN1|A|699
6V3E|1|sN1|G|700
6V3E|1|sN1|A|701
6V3E|1|sN1|G|702
6V3E|1|sN1|A|703

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11