IL_6VMI_077

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_077 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.2546

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6VMI|1|AA|A|1067
6VMI|1|AA|A|1068
6VMI|1|AA|A|1069
6VMI|1|AA|C|1070
6VMI|1|AA|U|1071
*
6VMI|1|AA|A|1087
6VMI|1|AA|C|1088
6VMI|1|AA|U|1089
6VMI|1|AA|A|1090
6VMI|1|AA|U|1091

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

28S ribosomal protein S21, mitochondrial