IL_6VMY_004

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CACGAAUU*ACAGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58126.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6VMY|1|A|C|326
6VMY|1|A|A|327
6VMY|1|A|C|328
6VMY|1|A|G|329
6VMY|1|A|A|330
6VMY|1|A|A|331
6VMY|1|A|U|332
6VMY|1|A|U|333
*
6VMY|1|A|A|342
6VMY|1|A|C|343
6VMY|1|A|A|344
6VMY|1|A|G|345
6VMY|1|A|A|346
6VMY|1|A|U|347
6VMY|1|A|G|348

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains