Motif IL_40132.1 Version IL_40132.1 of this group appears in releases 4.10 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 6-10 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9PN5_018 | 9PN5 | 0.0000 | 2 | A1 | LSU rRNA | G | 517 | G | 518 | A | 521 | A | 522 | A | 523 | U | 524 | C | 525 | * | G | 567 | G | 568 | A | 569 | A | 570 | U | 571 | A | 572 | C | 573 | cWW | tHW | tHW | tHW | cBW | cWW | ||
| 2 | IL_6VMY_004 | 6VMY | 0.9941 | 1 | A | Cobalamin riboswitch | C | 326 | A | 327 | G | 329 | A | 330 | A | 331 | U | 332 | U | 333 | * | A | 342 | C | 343 | A | 344 | G | 345 | A | 346 | U | 347 | G | 348 | cWW | ntHH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAAUC*GGAAUAC | 1 |
| CACGAAUU*ACAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAU*GAAUA | 1 |
| ACGAAU*CAGAU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tHS-tWS-cWW
- Heat map statistics
- Min 0.99 | Avg 0.50 | Max 0.99
Coloring options: