IL_6VU3_035

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6VU3|1|D|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU3_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.091

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6VU3|1|D|U|684
6VU3|1|D|G|685
6VU3|1|D|U|686
6VU3|1|D|A|687
6VU3|1|D|G|688
*
6VU3|1|D|C|699
6VU3|1|D|G|700
6VU3|1|D|U|701
6VU3|1|D|A|702
6VU3|1|D|G|703
6VU3|1|D|A|704
6VU3|1|D|G|705
6VU3|1|D|A|706

Current chains

Chain D

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S11

Chain a

Large subunit ribosomal RNA; LSU rRNA