IL_6VWL_036
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 6VWL|1|1|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_036 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.154
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6VWL|1|1|U|684
6VWL|1|1|G|685
6VWL|1|1|U|686
6VWL|1|1|A|687
6VWL|1|1|G|688
*
6VWL|1|1|C|699
6VWL|1|1|G|700
6VWL|1|1|U|701
6VWL|1|1|A|702
6VWL|1|1|G|703
6VWL|1|1|A|704
6VWL|1|1|G|705
6VWL|1|1|A|706
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 50S ribosomal protein L2
- Chain j
- 30S ribosomal protein S11
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