3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUUC*GGUAG
Length
10 nucleotides
Bulged bases
6VWL|1|2|U|2689, 6VWL|1|2|U|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWL_166 not in the Motif Atlas
Homologous match to IL_5J7L_348
Geometric discrepancy: 0.0676
The information below is about IL_5J7L_348
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

6VWL|1|2|U|2687
6VWL|1|2|G|2688
6VWL|1|2|U|2689
6VWL|1|2|U|2690
6VWL|1|2|C|2691
*
6VWL|1|2|G|2718
6VWL|1|2|G|2719
6VWL|1|2|U|2720
6VWL|1|2|A|2721
6VWL|1|2|G|2722

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain L
50S ribosomal protein L17
Chain N
50S ribosomal protein L19

Coloring options:


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