IL_6VWL_166
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6VWL|1|2|U|2689, 6VWL|1|2|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_166 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0676
- The information below is about IL_5J7L_348
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6VWL|1|2|U|2687
6VWL|1|2|G|2688
6VWL|1|2|U|2689
6VWL|1|2|U|2690
6VWL|1|2|C|2691
*
6VWL|1|2|G|2718
6VWL|1|2|G|2719
6VWL|1|2|U|2720
6VWL|1|2|A|2721
6VWL|1|2|G|2722
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L17
- Chain N
- 50S ribosomal protein L19
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