IL_6VWL_182

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

6VWL|1|2|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_182 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3808

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|U|82
6VWL|1|2|A|83
6VWL|1|2|A|84
6VWL|1|2|G|85
*
6VWL|1|2|C|97
6VWL|1|2|G|98
6VWL|1|2|U|99
6VWL|1|2|U|100
6VWL|1|2|A|101
6VWL|1|2|U|102
6VWL|1|2|A|103
6VWL|1|2|A|104

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L24

Chain W

50S ribosomal protein L29