IL_6VWN_055

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6VWN|1|1|A|1257, 6VWN|1|1|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_055 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2672

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6VWN|1|1|G|1255
6VWN|1|1|A|1256
6VWN|1|1|A|1257
6VWN|1|1|G|1258
*
6VWN|1|1|C|1277
6VWN|1|1|G|1278
6VWN|1|1|G|1279
6VWN|1|1|A|1280
6VWN|1|1|C|1281
6VWN|1|1|C|1282

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S3

Chain i

30S ribosomal protein S10

Chain m

30S ribosomal protein S14