IL_6VWN_057

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1927

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VWN|1|1|C|1303
6VWN|1|1|G|1304
6VWN|1|1|G|1305
6VWN|1|1|A|1306
6VWN|1|1|U|1307
6VWN|1|1|U|1308
*
6VWN|1|1|A|1329
6VWN|1|1|U|1330
6VWN|1|1|G|1331
6VWN|1|1|A|1332
6VWN|1|1|A|1333
6VWN|1|1|G|1334

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S13