IL_6VWN_058

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6VWN|1|1|C|1400, 6VWN|1|1|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_058 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1808

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6VWN|1|1|C|1399
6VWN|1|1|C|1400
6VWN|1|1|G|1401
*
6VWN|1|1|C|1501
6VWN|1|1|A|1502
6VWN|1|1|A|1503
6VWN|1|1|G|1504

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 4

HIV ribosomal frameshift signal

Chain 5

Transfer RNA; tRNA