IL_6VWN_071
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_071 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.0829
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6VWN|1|2|G|188
6VWN|1|2|G|189
6VWN|1|2|A|190
6VWN|1|2|A|191
6VWN|1|2|C|192
6VWN|1|2|U|193
6VWN|1|2|G|194
*
6VWN|1|2|C|201
6VWN|1|2|U|202
6VWN|1|2|A|203
6VWN|1|2|A|204
6VWN|1|2|G|205
6VWN|1|2|U|206
6VWN|1|2|A|207
6VWN|1|2|C|208
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L28
Coloring options: