IL_6VWN_072

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1173

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6VWN|1|2|C|239
6VWN|1|2|C|240
6VWN|1|2|A|241
6VWN|1|2|G|242
6VWN|1|2|U|243
6VWN|1|2|A|244
6VWN|1|2|G|245
*
6VWN|1|2|C|253
6VWN|1|2|G|254
6VWN|1|2|A|255
6VWN|1|2|A|256
6VWN|1|2|C|257
6VWN|1|2|G|258

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain J

50S ribosomal protein L15