3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWN_078 not in the Motif Atlas
Geometric match to IL_4WF9_017
Geometric discrepancy: 0.1547
The information below is about IL_4WF9_017
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6VWN|1|2|C|564
6VWN|1|2|C|565
6VWN|1|2|U|566
*
6VWN|1|2|A|575
6VWN|1|2|U|576
6VWN|1|2|G|577

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21

Coloring options:


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