IL_6VWN_081

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VWN|1|2|G|801, 6VWN|1|2|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_081 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|G|674
6VWN|1|2|A|675
6VWN|1|2|A|676
6VWN|1|2|A|677
6VWN|1|2|C|678
*
6VWN|1|2|G|799
6VWN|1|2|A|800
6VWN|1|2|G|801
6VWN|1|2|A|802
6VWN|1|2|U|803
6VWN|1|2|A|804
6VWN|1|2|G|805
6VWN|1|2|C|806

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15