IL_6VWN_084

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_084 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1344

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6VWN|1|2|U|703
6VWN|1|2|G|704
6VWN|1|2|A|705
6VWN|1|2|A|706
6VWN|1|2|G|707
*
6VWN|1|2|U|724
6VWN|1|2|G|725
6VWN|1|2|G|726
6VWN|1|2|A|727
6VWN|1|2|G|728

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2