IL_6VWN_090

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_090 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.1103

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|G|856
6VWN|1|2|G|857
6VWN|1|2|G|858
6VWN|1|2|G|859
6VWN|1|2|U|860
6VWN|1|2|A|861
6VWN|1|2|G|862
*
6VWN|1|2|C|915
6VWN|1|2|G|916
6VWN|1|2|A|917
6VWN|1|2|A|918
6VWN|1|2|U|919
6VWN|1|2|A|920
6VWN|1|2|C|921

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27

Chain X

50S ribosomal protein L30