IL_6VWN_097
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6VWN|1|2|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_097 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.1341
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6VWN|1|2|C|998
6VWN|1|2|U|999
6VWN|1|2|A|1000
6VWN|1|2|A|1001
6VWN|1|2|G|1002
*
6VWN|1|2|C|1153
6VWN|1|2|G|1154
6VWN|1|2|A|1155
6VWN|1|2|A|1156
6VWN|1|2|G|1157
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
- Chain X
- 50S ribosomal protein L30
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