IL_6VWN_098

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_098 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1204

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6VWN|1|2|U|1004
6VWN|1|2|C|1005
6VWN|1|2|C|1006
6VWN|1|2|C|1007
6VWN|1|2|A|1008
6VWN|1|2|A|1009
6VWN|1|2|A|1010
6VWN|1|2|G|1011
*
6VWN|1|2|C|1150
6VWN|1|2|A|1151

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain O

50S ribosomal protein L20