IL_6VWN_103

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_103 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.3025

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6VWN|1|2|G|1038
6VWN|1|2|A|1039
6VWN|1|2|A|1040
6VWN|1|2|G|1041
*
6VWN|1|2|C|1114
6VWN|1|2|G|1115
6VWN|1|2|G|1116
6VWN|1|2|C|1117

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25