IL_6VWN_113

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_113 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.415

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6VWN|1|2|C|1417
6VWN|1|2|G|1418
6VWN|1|2|A|1419
6VWN|1|2|A|1420
6VWN|1|2|G|1421
*
6VWN|1|2|C|1577
6VWN|1|2|U|1578
6VWN|1|2|A|1579
6VWN|1|2|A|1580
6VWN|1|2|G|1581

Current chains

Chain 2

23S ribosomal RNA

Nearby chains