IL_6VWN_114

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6VWN|1|2|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_114 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2807

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|G|1432
6VWN|1|2|A|1433
6VWN|1|2|A|1434
6VWN|1|2|G|1435
*
6VWN|1|2|C|1557
6VWN|1|2|C|1558
6VWN|1|2|U|1559
6VWN|1|2|G|1560
6VWN|1|2|C|1561

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2