IL_6VWN_159
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 6VWN|1|2|A|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWN_159 not in the Motif Atlas
- Homologous match to IL_5J7L_342
- Geometric discrepancy: 0.1228
- The information below is about IL_5J7L_342
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
6VWN|1|2|U|2522
6VWN|1|2|G|2523
*
6VWN|1|2|C|2540
6VWN|1|2|A|2541
6VWN|1|2|A|2542
6VWN|1|2|G|2543
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L13
Coloring options: