3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
6VWN|1|2|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWN_166 not in the Motif Atlas
Homologous match to IL_7A0S_098
Geometric discrepancy: 0.1369
The information below is about IL_7A0S_098
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6VWN|1|2|G|2737
6VWN|1|2|A|2738
6VWN|1|2|U|2739
6VWN|1|2|A|2740
6VWN|1|2|A|2741
6VWN|1|2|G|2742
*
6VWN|1|2|C|2762
6VWN|1|2|G|2763
6VWN|1|2|A|2764
6VWN|1|2|A|2765
6VWN|1|2|A|2766
6VWN|1|2|C|2767

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AC
50S ribosomal protein L36
Chain E
50S ribosomal protein L6
Chain G
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1952 s