3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGAUGGUAG*CGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWN_175 not in the Motif Atlas
Homologous match to IL_5J7L_359
Geometric discrepancy: 0.1142
The information below is about IL_5J7L_359
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.6
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6VWN|1|3|C|71
6VWN|1|3|G|72
6VWN|1|3|A|73
6VWN|1|3|U|74
6VWN|1|3|G|75
6VWN|1|3|G|76
6VWN|1|3|U|77
6VWN|1|3|A|78
6VWN|1|3|G|79
*
6VWN|1|3|C|97
6VWN|1|3|G|98
6VWN|1|3|A|99
6VWN|1|3|G|100
6VWN|1|3|A|101
6VWN|1|3|G|102
6VWN|1|3|U|103
6VWN|1|3|A|104
6VWN|1|3|G|105

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 2
Large subunit ribosomal RNA; LSU rRNA
Chain K
50S ribosomal protein L16
Chain T
50S ribosomal protein L25
Chain X
50S ribosomal protein L30

Coloring options:


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