IL_6VWN_188

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWN_188 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1775

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VWN|1|2|U|1851
6VWN|1|2|U|1852
6VWN|1|2|A|1853
6VWN|1|2|A|1854
6VWN|1|2|U|1855
6VWN|1|2|U|1856
6VWN|1|2|G|1857
6VWN|1|2|A|1858
6VWN|1|2|U|1859
6VWN|1|2|G|1860
*
6VWN|1|2|U|1882
6VWN|1|2|U|1883
6VWN|1|2|G|1884
6VWN|1|2|A|1885
6VWN|1|2|U|1886
6VWN|1|2|C|1887
6VWN|1|2|G|1888
6VWN|1|2|A|1889
6VWN|1|2|A|1890
6VWN|1|2|G|1891

Current chains

Chain 2

23S ribosomal RNA

Nearby chains