IL_6VYQ_030
3D structure
- PDB id
- 6VYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 6VYQ|1|D|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYQ_030 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0822
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6VYQ|1|D|U|605
6VYQ|1|D|G|606
6VYQ|1|D|A|607
6VYQ|1|D|A|608
6VYQ|1|D|A|609
6VYQ|1|D|U|610
6VYQ|1|D|C|611
6VYQ|1|D|C|612
*
6VYQ|1|D|G|628
6VYQ|1|D|A|629
6VYQ|1|D|A|630
6VYQ|1|D|C|631
6VYQ|1|D|U|632
6VYQ|1|D|G|633
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S4
- Chain N
- 30S ribosomal protein S8
- Chain U
- 30S ribosomal protein S16
- Chain V
- 30S ribosomal protein S17
Coloring options: