IL_6VYQ_171

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6VYQ|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYQ_171 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0681

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6VYQ|1|a|C|2636
6VYQ|1|a|U|2637
6VYQ|1|a|G|2638
6VYQ|1|a|A|2639
6VYQ|1|a|G|2640
*
6VYQ|1|a|C|2774
6VYQ|1|a|G|2775
6VYQ|1|a|A|2776
6VYQ|1|a|G|2777
6VYQ|1|a|A|2778
6VYQ|1|a|U|2779
6VYQ|1|a|G|2780
6VYQ|1|a|A|2781
6VYQ|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13