IL_6VYS_079

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYS_079 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.0463

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6VYS|1|a|C|564
6VYS|1|a|C|565
6VYS|1|a|U|566
*
6VYS|1|a|A|575
6VYS|1|a|U|576
6VYS|1|a|G|577

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L21

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20