IL_6VYT_020

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VYT|1|D|U|409
6VYT|1|D|G|410
6VYT|1|D|A|411
6VYT|1|D|A|412
6VYT|1|D|G|413
6VYT|1|D|A|414
6VYT|1|D|A|415
6VYT|1|D|G|416
*
6VYT|1|D|U|427
6VYT|1|D|G|428
6VYT|1|D|U|429
6VYT|1|D|A|430
6VYT|1|D|A|431
6VYT|1|D|A|432
6VYT|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4