IL_6VYT_082

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VYT|1|a|G|801, 6VYT|1|a|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_082 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0596

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VYT|1|a|G|674
6VYT|1|a|A|675
6VYT|1|a|A|676
6VYT|1|a|A|677
6VYT|1|a|C|678
*
6VYT|1|a|G|799
6VYT|1|a|A|800
6VYT|1|a|G|801
6VYT|1|a|A|802
6VYT|1|a|U|803
6VYT|1|a|A|804
6VYT|1|a|G|805
6VYT|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15