IL_6VYT_108

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6VYT|1|a|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_108 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.256

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6VYT|1|a|G|1059
6VYT|1|a|U|1060
6VYT|1|a|U|1061
6VYT|1|a|G|1062
*
6VYT|1|a|C|1076
6VYT|1|a|A|1077
6VYT|1|a|U|1078
6VYT|1|a|C|1079

Current chains

Chain a

23S rRNA

Nearby chains